Characterizing genetic diversity and creating novel gene pools in rice for trait dissection and gene function discovery

Rice diversity is the foundation for rice improvement programs. At IRRI, over 100,000 rice accessions are deposited, and intelligent use of this diversity can not only help solve current production problems but also create future production opportunities and tackle climate change challenges. To fully explore and utilize rice diversity, two ingredients are needed: 1 - the genetic blueprints of diverse rice accessions in use, 2 - plant populations with recombined genotypes allowing expression of phenotypic variation and discovery of new genes/QTLs for use in breeding programs. Sequencing of the genomes & obtaining SNP genotypes of many rice accessions is feasible due to decreasing cost of advanced DNA sequencing technologies. Coupled with the creation of populations suitable for trait dissection / phenotyping, discovery of gene functions and allelic variations causal to important agronomic traits becomes possible. This in turn will provide rich biological evidences to the rice/cereal crop genome annotation community

International agreements and the plant genetics research community: A guide to practice

Plant genetic resources (PGR), including collections held in national and international gene banks, provide access to a wide array of genetic diversity and are critical to genomics research, conservation efforts, and applied breeding. Yet, there is a general lack of awareness in the research community about the rules and treaties that govern the use of PGR, about access and benefit sharing obligations contained in international treaties and/or national laws, and about how best to comply with potentially applicable requirements. This article provides a brief history and overview of three key international agreements, namely the Convention on Biological Diversity, the Nagoya Protocol, and the International Treaty on Plant Genetic Resources for Food and Agriculture, which collectively address responsibilities and obligations related to the use of much of the world’s PGR. By highlighting the coverage and key considerations of each agreement, the article provides a guide for those who use PGR in plant genetics research to better understand when and how international agreements apply, and—where the rules are unclear—to suggest best practices for compliance with existing agreements

Using genomic sequence information to increase conservation and sustainable use of crop diversity and benefit-sharing

This article describes how CGIAR centers and partners are using genomic sequence information to promote the conservation and sustainable use of crop genetic diversity, and to generate and share benefits derived from those uses. The article highlights combined institutional, and benefit-sharing-related challenges that need to be addressed to support expanded use of digital sequence information in agricultural research and developmen

CGIAR genebank viability data reveal inconsistencies in seed collection management

Genebanks underpin global food security, conserving and distributing agrobiodiversity for use in research and breeding. The CGIAR collections include >700,000 seed accessions, held in trust as global public goods. However, the role of genebanks in contributing to global food security can only be realized if collections are effectively managed. Examination of the historical viability monitoring data from seven CGIAR genebanks confirmed that high seed viability was maintained for many decades for the various crops and forage species. However, departures from optimum management procedures were revealed, and there were insufficient data gathered to derive reliable estimates of longevity needed to better forecast regeneration requirements, estimate the size of seed lots that should be stored, and optimize accession monitoring intervals

Technical assistance to strengthen national agricultural research organizations’ capacity to use digital sequence information. A submission from CGIAR

CGIAR submitted this report in response to an open request from the Plant Treaty Secretary, for submissions regarding, a) contracting parties’ and stakeholders’ capacity building needs for accessing and using digital sequence information (DSI)/genomic sequence data (GSD) and b) ‘technical assistance’ and ‘actions taken’ by stakeholders (including CGIAR) ‘to reduce the existing gap on capacity regarding DSI/GSD’. The primary objective of this paper is to respond to the second part of the request by sharing information about how CGIAR Centers and Initiatives have been assisting organizations outside CGIAR to access, generate, share, analyse, and use DSI for the conservation of plant genetic resources for food and agriculture (PRGFA) and for the use of PGRFA in pre-breeding and breeding. This paper does not provide an exhaustive account of all of the Centers’ relevant activities, but it does provide a general overview of the kinds of activities in which the Centers have been engaged. CGIAR very much appreciates the Governing Body’s initiative, as expressed in Resolution 16/2022, to ask the Plant Treaty Secretariat to gather and synthesize information about both demand for, and supply of, capacity strengthening related to DSI linked to plant genetic resources for food and agriculture, with the overall objective of working to close the capacity gap between developed and developing countries. It is our hope that, based on the outcomes of this exercise, CGIAR will be able to further adapt and improve its own approach to capacity sharing in response to needs prioritized by the Governing Body

Digital sequence information is changing the way genetic resources are used in agricultural research and development: implications for new benefit-sharing norms

This paper analyses the ways in which CGIAR Centers use digital sequence information (DSI) in their efforts to conserve and sustainably utilize the world’s most important crop and livestock genetic diversity. The paper then reflects on which of the benefit-sharing options currently under consideration by the Contracting Parties to the CBD (and the versions of those options that must be considered by the Governing Body of the Plant Treaty and the UN FAO Commission on Genetic Resources for Food and Agriculture) would provide effective policy support for the continued use of DSI in agricultural research and development in the future